{ "_id": "6a102a99acfb0bcc41c921a6", "Package": "genetics", "Title": "Population Genetics", "Version": "1.3.8.1.3", "Date": "2012-11-26", "Author": "Gregory Warnes, with contributions from Gregor Gorjanc,\nFriedrich Leisch, and Michael Man.", "Maintainer": "Gregory Warnes ", "Description": "Classes and methods for handling genetic data. Includes\nclasses to represent genotypes and haplotypes at single markers\nup to multiple markers on multiple chromosomes. Function\ninclude allele frequencies, flagging homo/heterozygotes,\nflagging carriers of certain alleles, estimating and testing\nfor Hardy-Weinberg disequilibrium, estimating and testing for\nlinkage disequilibrium, ...", "biocViews": "Genetics", "License": "GPL", "Packaged": { "Date": "2026-05-13 06:51:16 UTC", "User": "root" }, "NeedsCompilation": "no", "Repository": "https://warnes.r-universe.dev", "Date/Publication": "2021-03-01 06:10:07 UTC", "RemoteUrl": "https://github.com/cran/genetics", "RemoteRef": "HEAD", "RemoteSha": "b96215a2ce0d9bac40f63d5747fb5f0efca2ce80", "MD5sum": "c1582426d1c15890a53b07bf7cef98db", "_user": "warnes", "_type": "src", "_file": "genetics_1.3.8.1.3.tar.gz", "_fileid": "3efa70a52c455750211e23c0ac76042bd974fe6e2d89b69ba3aee8e290926cac", "_filesize": 470420, "_sha256": "3efa70a52c455750211e23c0ac76042bd974fe6e2d89b69ba3aee8e290926cac", "_created": "2026-05-13T06:51:16.000Z", "_published": "2026-05-22T10:06:17.673Z", "_distro": "noble", "_jobs": [ { "job": 77358531020, "time": 109, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "6963460586" }, { "job": 77358530878, "time": 111, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "6963461067" }, { "job": 77358531218, "time": 196, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "6963675555" }, { "job": 77358531076, "time": 171, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "6963651097" }, { "job": 77358530581, "time": 140, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6963433005" }, { "job": 77358530352, "time": 88, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157951255" }, { "job": 77358530682, "time": 99, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "6963459386" }, { "job": 77358531303, "time": 83, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "6963454658" }, { "job": 77358531376, "time": 75, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "6963452003" } ], "_buildurl": "https://github.com/r-universe/warnes/actions/runs/25783221409", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/genetics", "_commit": { "id": "b96215a2ce0d9bac40f63d5747fb5f0efca2ce80", "author": "Gregory Warnes ", "committer": "cran-robot ", "message": "version 1.3.8.1.3\n", "time": 1614579007 }, "_maintainer": { "name": "Gregory Warnes", "email": "greg@warnes.net", "login": "warnes", "linkedin": "in/gregorywarnes", "uuid": 6144863 }, "_registered": true, "_dependencies": [ { "package": "combinat", "role": "Depends" }, { "package": "gdata", "role": "Depends" }, { "package": "gtools", "role": "Depends" }, { "package": "MASS", "role": "Depends" }, { "package": "mvtnorm", "role": "Depends" } ], "_owner": "cran", "_selfowned": true, "_usedby": 5, "_updates": [], "_tags": [], "_topics": [ "genetics" ], "_stars": 2, "_contributors": [ { "user": "warnes", "count": 7, "uuid": 6144863 } ], "_userbio": { "uuid": 6144863, "type": "user", "name": "Gregory R. 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"Experimental Function to Correct Confidence Intervals At or Near Boundaries of the Parameter Space by 'Sliding' the Interval on the Quantile Scale.", "topics": [ "ci.balance" ] }, { "page": "depreciated", "title": "Depreciated functions", "topics": [ "power.casectrl" ] }, { "page": "diseq", "title": "Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium", "topics": [ "diseq", "diseq.ci", "diseq.genotype", "diseq.table", "print.diseq" ] }, { "page": "expectedGenotypes", "title": "Construct expected genotypes/haplotypes according to known allele variants", "topics": [ "expectedGenotypes", "expectedHaplotypes" ] }, { "page": "genotype", "title": "Genotype or Haplotype Objects.", "topics": [ "%in%", "%in%.default", "%in%.genotype", "%in%.haplotype", "==.genotype", "==.haplotype", "allele.count.genotype", "as.genotype", "as.genotype.allele.count", "as.genotype.character", "as.genotype.default", "as.genotype.factor", "as.genotype.genotype", "as.genotype.haplotype", 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