R-universe - warnes (Gregory R. Warnes)

gmodels - Various R Programming Tools for Model Fitting

Various R programming tools for model fitting.

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10.11 score 2 stars 31 dependents 4.7k scripts 29k downloads

genetics - Population Genetics

Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...

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genetics

5.59 score 2 stars 5 dependents 320 scripts 4.0k downloads

mcgibbsit - Warnes and Raftery's 'MCGibbsit' MCMC Run Length and Convergence Diagnostic

Implementation of Warnes & Raftery's MCGibbsit run-length and convergence diagnostic for a set of (not-necessarily independent) Markov Chain Monte Carlo (MCMC) samplers. It combines the quantile estimate error-bounding approach of the Raftery and Lewis MCMC run length diagnostic `gibbsit` with the between verses within chain approach of the Gelman and Rubin MCMC convergence diagnostic.

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3.70 score 9 scripts 242 downloads